Survival-associated meQTLs across different cancer types


We identified 23,432 meQTLs associated with patient overall survival across different cancer types at FDR < 0.05.


e.g., "BLCA"
e.g., "rs11600543"


Cancer type
SNP ID
SNP position (hg19)
Alleles (A/a)
log-rank test p-value
Sample size
Median survival time AA
Median survival time Aa
Median survival time aa
Dispaly
THYM rs111643822 chr9:97163484 A/G 7.78E-5 119 41.77 40.43 17.03 KM Plot
THYM rs111647230 chr5:34853446 G/C 0.000129 116 41.22 42.9 28.43 KM Plot
THYM rs111649163 chr7:29689176 C/T 7.46E-13 117 38.13 45.87 6 KM Plot
THYM rs111653763 chr7:135326426 G/A 0.000314 119 38.23 50.1 22.8 KM Plot
THYM rs111656468 chr2:30649702 G/A 0 118 37.27 50.47 12.63 KM Plot
THYM rs111670102 chr1:227479970 C/G 0.000123 119 42.82 37.13 19.63 KM Plot
THYM rs111709101 chr21:44066855 C/T 0.000139 115 40.67 42.9 28.43 KM Plot
THYM rs111725211 chr9:97179626 T/C 8.1E-5 119 41.77 42 17.03 KM Plot
THYM rs11176800 chr12:68001005 A/G 6.23E-9 119 40.67 44.75 7.15 KM Plot
THYM rs111816283 chr4:70070702 C/T 5.73E-13 118 39.75 49.6 6 KM Plot
THYM rs111919622 chr9:97177113 A/G 8.1E-5 119 41.77 42 17.03 KM Plot
THYM rs111929179 chr15:93975679 G/A 4.24E-13 117 40.67 50.07 6 KM Plot
THYM rs111972498 chr11:125579367 A/G 0.000198 118 45.87 35.67 23.42 KM Plot
THYM rs112019419 chr17:73475834 A/T 0.000139 117 38.13 41.77 50.1 KM Plot
THYM rs112037829 chr9:97264542 G/C 7.08E-5 119 39.75 45.87 17.03 KM Plot